Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015937551.1_cds_XP_016482806.1_73991
CDS Infomation

[gene=LOC107803574] [db_xref=GeneID:107803574] [protein=probable indole-3-acetic acid-amido synthetase GH3.1] [protein_id=XP_016482806.1] [location=complement(join(27794..29171,29425..29526,29690..30009))] [gbkey=CDS]
Sequence

ATGGCTGTTGATTCTTGTCTTTCATCTCCTCTTGGCCCTCCGGCATGTGAGAAAGATGCC
AAGGCTCTTCAGTTCATTGAGGAGATGACTAAAAATACTGATTCAGTACAAGAGAAAGTG
TTGGCTGAAATACTAAGCCGAAATGCCAATACTGAGTACCTCCAAAGATTCAAAGTTGGT
GGTGCAACTGACCGTGACACGTTCAAGTCCAAGGTTCCCGTTGTCACATACGAGGATCTT
AAACCTTATATTGATCGTGTCGCCAATGGCGATCGCTCACCAATCTTCTCATCTCATCCT
ATTTCAGAGTTCCTTACCAGTTCGGGGACGTCTGCTGGAGAGAGAAAGCTGATGCCCACA
ATTGCGGATGAGCTAGAACGCAGACAGAAATTGTACAGTCTTCTCCAGCCCGTGATGAAT
CTGTATGTGCCTGGTCTAGACAAGGGGAAGGGATTATACTTTCTATTTATAAAGGCAGAA
ACCAAGACTCCTGGTGGCCTTGTTGCACGTCCAGTACTGACTAGTTACTACAAGAGTGAA
CAATTCAAGACTAGGCCATACGACCCTTCCAATGTCTACACCAGCCCTAACGAGGCTATC
CTCTGCGTCGACTCTTTCCAAAGTATGTACACTCAAATGCTTTGTGGCCTTCTCATGAGA
GAAGAAGTCCTCCGAGTAGGCGCTGTTTTCGCCTCAGGCCTACTTCGGGCCATCCGTTTT
CTTCAACTCAACTGGCAGCAATTAGCTCATGATATTGCAACTGGAACCCTAAACCCTAGA
GTTTCAGACCCTTCAATCAGAAATTGCATGTCCAAAATACTCAAACCAAATCCTGAACTT
GCAGAGTTTGTTACTAAAGAATGTGATGGCGACAACTGGGAAGGAATCATTACTAGAATT
TGGCCAAACACAAAGTACTTGGACGTCATAGTCACAGGTGCAATGGCTCAATATATCCCT
ACTTTAGATTATTACAGTGGGGGTCTACCAAAGGCTTGTACAATGTATGCATCGTCCGAA
TGTTATTTTGGTCTCAATTTAAAACCAATGTGCAAGCCTTCTGAAGTTTGTTACACTATC
ATGCCAAATATGGGTTACTTTGAATTCATCCCACATGACCCAGCCAACCCGGTACAAATC
TCTCATGATTCGCCCCCTCATCTCGTGGACCTGGCTGACGTAGAATTGGGAAAAGAATAC
GAGCTCGTGATCACCACTTATGCTGGATTATGTCGTTACCGAGTTGGTGACATACTACAG
GTTACCGGATTTCACAACTCAGCACCTCAATTCAAATTTGTTAGGAGAAAAAATGTGTTG
TTGAGCATTGACTCGGACAAAACTGATGAGTCTGAATTGCAAATGGCTATTGAAAATGCA
ACAGCACTTTTGCGCCCATATGATACTAATTTGGTCGAGTACACGAGTTTTGCTGATACA
AAGACAATTCCGGGGCACTACGTGATTTACTGGGAATTACTAGTAAAGGACCCAACCAAC
CCACCGAGTCAGGAGGTGTTGAACCAGTGCTGCTTGGCTATGGAAGAATCTTTGAACTCA
GTGTATAGACAGTGTCGCCTTGCGGACAATTCAATTGGACCACTTGAGATTAGAATAGTG
AAAAATGGGACATTTGAAGAGCTGATGGATTATGCAATTTCGAGGGGTGCATCAATTAAT
CAGTATAAGGCTCCGAGGTGTGTCAATTTTACTCCTATTGTGGAACTTCTTGATTCCAGG
GTGGTATCTGTGCATTTCAGTCCGGCTGCTCCTCACTGGACCCCAGAACGGCGACGTTAG

Peptide Sequence

PEP ID

XP_016482806.1
PEP Infomation

PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Nicotiana tabacum]
Sequence

MAVDSCLSSPLGPPACEKDAKALQFIEEMTKNTDSVQEKVLAEILSRNANTEYLQRFKVG
GATDRDTFKSKVPVVTYEDLKPYIDRVANGDRSPIFSSHPISEFLTSSGTSAGERKLMPT
IADELERRQKLYSLLQPVMNLYVPGLDKGKGLYFLFIKAETKTPGGLVARPVLTSYYKSE
QFKTRPYDPSNVYTSPNEAILCVDSFQSMYTQMLCGLLMREEVLRVGAVFASGLLRAIRF
LQLNWQQLAHDIATGTLNPRVSDPSIRNCMSKILKPNPELAEFVTKECDGDNWEGIITRI
WPNTKYLDVIVTGAMAQYIPTLDYYSGGLPKACTMYASSECYFGLNLKPMCKPSEVCYTI
MPNMGYFEFIPHDPANPVQISHDSPPHLVDLADVELGKEYELVITTYAGLCRYRVGDILQ
VTGFHNSAPQFKFVRRKNVLLSIDSDKTDESELQMAIENATALLRPYDTNLVEYTSFADT
KTIPGHYVIYWELLVKDPTNPPSQEVLNQCCLAMEESLNSVYRQCRLADNSIGPLEIRIV
KNGTFEELMDYAISRGASINQYKAPRCVNFTPIVELLDSRVVSVHFSPAAPHWTPERRR

Transcript Sequence

Gene sequence data has not been registered.